miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|19524924|gb|AJ436472.1|AJ436472 CACGAGGAGACTTCAGTGATCAAAGGAAACCTGAACCCCGTCTGGAATGAAGAACTCAAGCTCTCTGTTCCTCAGAAGTA
CGGGCCTCTGAAGCTGCAAGTGTTGGACCATGATATGGTTTCCAAAGACGACCTGATGGGGGAGGCCGAGATCGACCTGC
AGCCCATGATCAATGCGGCAGCATCGTTTGGAGATCCAGAGCTGCTCGGTGACATACAGATCGGCCGGTGGCTCAAGTCC
GGTGACAACGCTCTAACCGCCGACAGCGCTGTCATGGTGACCGGAGGCAAGGTGAAGCAGGAGGTTTCCCTGAAGCTGCA
GCACACCGAGTCGGGGGAGGTGACGGTGGAGATGGAATGGATGGCTCTAAACATGTAGAGAATCCGGATACGATGGCAAA
TTTGCCAAGGCCACTGCATACACAATGATGTGTTGTACTCTCTCCGTCTTAAAATAAGTGTCTCAACTTTGTACTAGCTC
TAGTGCAAAGTTGTACTAAGCTTGAGACACTTATTTTGGGACGGAGGGAGTAGTATTTTGCTGCAAAGGGTCCGTTGAAT
CAACTTTTTCTTGGAAAATAACAATAATTTCTGTTATGACATACCGAGTACT




Most similar to sp|Q9FVJ3|AGD12_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating
           protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1
          Length = 337

 Score =  169 bits (429), Expect = 1e-41
 Identities = 77/121 (63%), Positives = 98/121 (80%)
 Frame = +1

Query: 7   ETSVIKGNLNPVWNEELKLSVPQKYGPLKLQVLDHDMVSKDDLMGEAEIDLQPMINAAAS 186
           +++V+K NLNPVWNEEL LSVP  YG +KLQV D+D  S DD+MGEAEID+QP+I +A +
Sbjct: 215 QSTVVKSNLNPVWNEELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMA 274

Query: 187 FGDPELLGDIQIGRWLKSGDNALTADSAVMVTGGKVKQEVSLKLQHTESGEVTVEMEWMA 366
           FGDPE+ GD+QIG+WLKS DNAL  DS + +  GKVKQEV +KLQ+ ESGE+ +EMEW+ 
Sbjct: 275 FGDPEMFGDMQIGKWLKSHDNALIEDSIINIADGKVKQEVQIKLQNVESGELELEMEWLP 334

Query: 367 L 369
           L
Sbjct: 335 L 335